CleanCloud

Thomas Maloney

CleanCloud Payroll

CleanCloud Payroll (U.S. only) makes paying your team fast and stress-free. Automate taxes and stay compliant – right from your POS.

Introducing CleanCloud Payroll

Find out what information you’ll need to set up your payroll account - or let us complete most of it for you in just minutes.

What Information Is Required to Set Up Payroll?

Overview

Step-by-step guide to fully set up CleanCloud Payroll with Gusto, from adding users to verifying your bank account.

Onboarding With CleanCloud Payroll

Learn how to schedule a demo, view your billing history, or contact CleanCloud Payroll support - all from one place.

Account Resources & Settings for CleanCloud Payroll

Learn how to update your company info, addresses, tax IDs, signatory, SUI rate, and more in CleanCloud Payroll - all in one place.

Edit Company Details in CleanCloud Payroll

Set up Workers' Comp in CleanCloud Payroll with NEXT Insurance—get quotes, manage policies, and stay compliant, all in one place.

Set Up Workers' Compensation With NEXT Insurance

Company Set Up & Details

Paying Your Team

Learn how to set up, manage, edit, or remove benefit deductions and contributions for employees in CleanCloud Payroll.

Add & Manage Benefit Deductions in CleanCloud Payroll

Learn how to add, manage, or remove post-tax garnishments and deductions like child support directly in CleanCloud Payroll.

Add or Remove a Garnishment or Other Post-Tax Deduction in CleanCloud Payroll

Benefit & Garnishment Deductions

Learn how to add one-time reimbursements for employees and contractors in CleanCloud Payroll, including steps for regular & off-cycle runs.

Reimbursements in CleanCloud Payroll

Expense & Reimbursements

Learn how overtime laws work by state, how to calculate regular pay rates, and correctly process overtime in CleanCloud Payroll.

Overtime in CleanCloud Payroll

Overtime

Learn how to pay, cancel, or record contractor payments for tax reporting through CleanCloud Payroll, including handling bank errors.

Paying Contractors in CleanCloud Payroll

Paying Contractors

Learn how to update payment methods, split paychecks, and manage direct deposit or check payments for employees and contractors.

Payment Methods in CleanCloud Payroll

Payment Methods

Learn how to run bonus payrolls, understand bonus types, tax rules, PTO handling, and include or exclude deductions in CleanCloud.

Bonus Payrolls in CleanCloud Payroll

Learn how to issue a payroll advance and recover it through a one-time deduction in CleanCloud Payroll, step-by-step.

Give an Employee a Payroll Advance

Learn how to properly dismiss an employee or contractor in CleanCloud Payroll, including final pay, deductions, and offboarding steps.

How To Dismiss an Employee in CleanCloud Payroll

Learn how to run off-cycle payrolls in CleanCloud to pay employees outside your regular schedule - no extra fees, full flexibility.

Off-Cycle Payrolls in CleanCloud Payroll

Learn how to record past payrolls in CleanCloud, including steps for off-cycle entries and tax compliance for previously paid wages.

Record Past Payrolls in CleanCloud Payroll

Track staff hours and edit shifts easily in CleanCloud. Review clock-ins and make changes directly in Settings → Users → View Hours.

Viewing Staff Hours and Editing Shifts

Step-by-step guide to running your regular payroll in CleanCloud, including tips, deadlines, and payment method requirements.

How To Run Your Regular Payroll

Processing Payrolls

Learn how to set up, manage, and report employee tax exemptions correctly in CleanCloud Payroll, including federal and state updates.

Set Up & Manage Employee Tax Exemptions in CleanCloud Payroll

Tax Exemptions

Learn how to enter previous payrolls during account setup to ensure accurate tax filings and W-2s for current and dismissed employees.

Enter Previous Payroll Information During Account Setup

Learn how to view detailed payroll and contractor payment history in CleanCloud, including receipts, earnings, and tax breakdowns.

View Payroll History in CleanCloud Payroll

Learn how to view, download, and print employee paystubs for a specific payroll directly from your CleanCloud Payroll account.

View, Download & Print Employee Paystubs

Learn how to view and download payroll reports like Payroll Journal and Custom Reports directly from your CleanCloud account.

View & Download Payroll Reports

This article provides you with all the information you need to know when trying to find all historical data.

Where Can Employees & Employers View Pay Stubs?

Payroll History

Learn how to add, change, or remove pay schedules in CleanCloud Payroll, including pay frequency, pay periods, and employee assignments.

Add, Change, or Remove a Pay Schedule in CleanCloud Payroll

Learn how to enable or disable Payroll on AutoPilot®, how it works, and what to do before it runs to ensure accurate, automated payroll.

Payroll on AutoPilot® in CleanCloud Payroll

Learn about the 4-day, 2-day, and next-day direct deposit options in CleanCloud Payroll, including requirements and processing timelines.

Direct Deposit Payment Speeds in CleanCloud Payroll

Payroll Settings

Learn how to add a previously dismissed employee to CleanCloud Payroll so you can report missing payroll history accurately.

Add a Previously Dismissed Employee in CleanCloud Payroll

Find your state’s deadline for providing final paychecks and see if unused vacation must be paid when an employee leaves.

Dismissal Paycheck Requirements by State

Learn how to add new employees to CleanCloud Payroll, either by sending them a self-onboarding email or entering their info manually.

How to Add a New Employee to CleanCloud Payroll

How to dismiss or rehire an employee in CleanCloud Payroll, including final pay, onboarding steps, and key rules to stay compliant.

How to Dismiss & Rehire an Employee in CleanCloud Payroll

Follow this checklist to offboard employees properly—covering payroll, tax forms, and account access to ensure a smooth and compliant exit.

Offboarding Checklist

People

Find the right tax and registration info for your state. Includes links to agency sites for setup, account numbers, and employer rates.

State Tax Information & Registration

Learn how to handle tax notices—from rate changes to payment issues—and when to update info or contact CleanCloud Support.

What To Do If You Get A Tax Notice From An Agency

We reconcile taxes each quarter to ensure accurate filings. You may see a debit or refund if adjustments were made.

End of Quarter - Tax Reconciliation Payrolls & Debits

We reconcile taxes each year to ensure accurate filings. You may see a debit or refund if adjustments were made.

End of Year - Tax Reconciliation Payrolls & Debits

Gusto handles most payroll tax filings. Learn what we file, when we file it, and what notices you can ignore.

Federal & State Taxes & Forms Filed By Gusto

Taxes Forms & Compliance

Find quick answers to common questions about setting up and managing payroll with CleanCloud, including costs, payments, and support.

Frequently Asked Questions – CleanCloud Payroll

Frequently Asked Questions

Product Updates

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